Software
- Nat Biotechnol. 2013 Jan 6, 31(2):160-5
- PLoS Comp Bio, 2013 May 2, 9(5)
- PLoS Comp Bio, 2015 November 6, 11(11)
- Bioengineering, 2016 February 6, 3(1),9
- PNAS, 2016 March 22;113(12):E1757-66
- Metabolic Engineering, 2017 March 29;41:67-81
- Host-Pathogen Battle Game
